[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 165 items for (author: yu & lj)

EMDB-18594:
Cryo-EM structure of E. coli cytochrome bo3 quinol oxidase assembled in peptidiscs
Method: single particle / : Gao Y, Zhang Y, Hakke S, Peters PJ, Ravelli RBG

EMDB-36678:
PSI-AcpPCI supercomplex from Amphidinium carterae
Method: single particle / : Li ZH, Li XY, Wang WD

EMDB-36742:
PSI-AcpPCI supercomplex from Symbiodinium
Method: single particle / : Li ZH, Li XY, Wang WD

EMDB-36743:
PSI-AcpPCI supercomplex from Symbiodinium
Method: single particle / : Li XY, Li ZH, Wang WD

EMDB-37795:
Cry-EM structure of cannabinoid receptor-arrestin 2 complex
Method: single particle / : Wang YX, Wang T, Wu LJ, Hua T, Liu ZJ

EMDB-37465:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-37466:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-43542:
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

EMDB-35987:
Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-36054:
Structure of FCP trimer in Cyclotella meneghiniana
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-37267:
Structure of PSII-FCPII-G/H complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-37268:
Structure of PSII-FCPII-I/J/K complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-37701:
Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with rabbit ACE2 (local refinement)
Method: single particle / : Li LJ, Shi KY, Yu GH, Gao GF

EMDB-37702:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 RBD in complex with rabbit ACE2 (local refinement)
Method: single particle / : Li LJ, Shi KY, Yu GH, Gao GF

EMDB-37703:
Cryo-EM structure of SARS-CoV RBD in complex with rabbit ACE2
Method: single particle / : Li LJ, Shi KY, Yu GH, Gao GF

EMDB-37704:
Cryo-EM map of SARS-CoV-2 prototype spike protein in complex with rabbit ACE2
Method: single particle / : Shi KY, Li LJ, Yu GH, Gao GF

EMDB-37706:
Cryo-EM map of SARS-CoV-2 Omicron BA.4/5 spike protein in complex with rabbit ACE2
Method: single particle / : Li LJ, Shi KY, Yu GH, Gao GF

EMDB-38137:
Cryo-EM map of SARS-CoV spike protein(6P) in complex with rabbit ACE2, 1-up state
Method: single particle / : Li LJ, Shi KY, Yu GH, Gao GF

EMDB-38144:
Cryo-EM map of SARS-CoV spike protein(6P) in complex with rabbit ACE2, 2 RBD-up,1 ACE2-binding
Method: single particle / : Li LJ, Shi KY, Yu GH, Gao GF

EMDB-38152:
Cryo-EM map of SARS-CoV spike protein(6P) in complex with rabbit ACE2, 3 RBD-up state
Method: single particle / : Li LJ, Shi KY, Yu GH, Gao GF

EMDB-35727:
Cryo-EM structure of the CRT-LESS RC-LH core complex from roseiflexus castenholzii
Method: single particle / : Wang GL, Qi CH, Yu LJ

EMDB-35721:
Cryo-EM structure of the RC-LH core complex from roseiflexus castenholzii
Method: single particle / : Wang GL, Qi CH, Yu LJ

EMDB-28850:
SARS-CoV-2 Gamma 6P Mut7 S + COVA309-3 Fab
Method: single particle / : Torres JL, Ward AB

EMDB-28851:
SARS-CoV-2 Gamma 6P Mut7 S + COVA309-10 Fab
Method: single particle / : Torres JL, Ward AB

EMDB-28852:
SARS-CoV-2 Omicron 6P S + COVA309-35 Fab
Method: single particle / : Torres JL, Ward AB

EMDB-28853:
SARS-CoV-2 Gamma 6P Mut7 + S COVA309-38 Fab
Method: single particle / : Torres JL, Ward AB

EMDB-35706:
Cryo-EM structure of GIPR splice variant 1 (SV1) in complex with Gs protein
Method: single particle / : Zhao FH, Hang KN, Zhou QT, Shao LJ, Li H, Li WZ, Lin S, Dai AT, Cai XQ, Liu YY, Xu YN, Feng WB, Yang DH, Wang MW

EMDB-35707:
Cryo-EM structure of GIPR splice variant 2 (SV2) in complex with Gs protein
Method: single particle / : Zhao FH, Hang KN, Zhou QT, Shao LJ, Li H, Li WZ, Lin S, Dai AT, Cai XQ, Liu YY, Xu YN, Feng WB, Yang DH, Wang MW

EMDB-27257:
Apo gRAMP
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27259:
gRAMP-match PFS target
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27260:
gRAMP-TPR-CHAT (Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27261:
gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27262:
gRAMP-TPR-CHAT match PFS target RNA(Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27263:
gRAMP non-matching PFS-with Mg
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

PDB-8d97:
Apo gRAMP
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

PDB-8d9e:
gRAMP-match PFS target
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

PDB-8d9f:
gRAMP-TPR-CHAT (Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

PDB-8d9g:
gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

PDB-8d9h:
gRAMP-TPR-CHAT match PFS target RNA(Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

PDB-8d9i:
gRAMP non-matching PFS-with Mg
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-40162:
E. coli MlaC bound to MlaFEDB
Method: single particle / : MacRae MR, Coudray N, Ekiert D, Bhabha G

EMDB-34276:
Cryo-EM structure of CB2-G protein complex
Method: single particle / : Wu LJ, Hua T, Liu ZJ, Li XT, Chang H

EMDB-34277:
Cryo-EM structure of CP-CB2-G protein complex
Method: single particle / : Wu LJ, Hua T, Liu ZJ, Li XT, Chang H

EMDB-34278:
Cryo-EM structure of HU-CB2-G protein complex
Method: single particle / : Wu LJ, Hua T, Liu ZJ, Li XT, Chang H

EMDB-34279:
Cryo-EM structure of LEI-CB2-Gi complex
Method: single particle / : Liu ZJ, Hua T, Li XT, Chang H, Wu LJ

EMDB-29101:
EGFR:Degrader:VHL:Elongin-B/C:Cul2
Method: single particle / : Rosenberg SC

EMDB-33931:
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Method: single particle / : Tani K, Kanno R, Ji XC, Satoh I, Kobayashi Y, Nagashima KVP, Hall M, Yu LJ, Kimura Y, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY

EMDB-29041:
E. coli MlaFEDB bound to MlaC
Method: single particle / : MacRae MR, Coudray N, Ekiert D, Bhabha G

EMDB-27215:
ELIC apo in POPC nanodisc
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

EMDB-27216:
ELIC with cysteamine in POPC nanodisc
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more